Scaffold Ga0209722_1001109

Overview

Basic Information

• Taxon OID: 3300026252
• Scaffold ID: Ga0209722_1001109
• Source Dataset Name: Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_A C12 SIP DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25019
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location

• Location Name: Washington, USA
• Coordinates
  • Lat. (^o): 47.6525
  • Long. (^o): -122.3049

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005744	Metagenome / Metatranscriptome	391	Y
F043951	Metagenome / Metatranscriptome	155	N
F054061	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209722_10011091	F054061	AGGAG	MDETFEIIKAGAPYGPPEQALYRIQQTYPDGSGGRLNIDWEGLLRLHEVIHDRIALEGRVCETCGTKGCH
Ga0209722_100110943	F005744	AGGAG	MDDETFEIIKAGAPYGPPEQALYRIQQTYPDGSGGRLNVDWEGLLQLHELIHDRIALEGRVCETCGTKGCHRPATWEIECRGAGVSGRLIYACDEHAPDEAILSPQDEIRRCA
Ga0209722_100110944	F043951	GGTGG	MDPIGLGRPIEASLGPRYRCPVCGLKLWTIQAPWTGWQEWYRTEDGRRHYKHRCNLMEDALVMFRWMFGQDW