Scaffold Ga0209030_100458

Overview

Basic Information

• Taxon OID: 3300026244
• Scaffold ID: Ga0209030_100458
• Source Dataset Name: Upper troposphere microbial communities - SEAC4RS-RF7-005 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 805
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Source Dataset Sampling Location

• Location Name: USA and various oceans
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045749	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209030_1004581	F045749	N/A	ITNDDRRFCVMYGRIQNETELFDFFGGREQTADYFENLFAESEKHAGVIKSFLLKYNISDEFKANGRAPDTSSRQAMIQATISPEQCSVEDLINKHECSVVNGRILDVTWLNELCVIDGDMLSPTRTLGHILSDMGYSQIEGRRVKIQKTRENHYIWFKNVAGAASSDVIEQVRDFFKKGLDEVPF