Scaffold Ga0209750_1003738

Overview

Basic Information

• Taxon OID: 3300026237
• Scaffold ID: Ga0209750_1003738
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4582
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.534
  • Long. (^o): -110.7978

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033339	Metagenome / Metatranscriptome	177	N
F036130	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209750_10037382	F033339	GAGG	MGVQGGSAGGPQIQGRLPNQSLFQGGCIVFRSKLTNLDVGIAISAPSPRVRVLFDNRNHATQKVILYVGFPDKESAERVYSWLITHGYRHYDRATDTGILKPRKAERVDGMNWEIKIHRPTVELVNRFIAKDLAR
Ga0209750_10037384	F036130	AGGAGG	MSEFPVFRSGEEFLRYMEQLVVDIRAGRVEDPPYHAIFFSCRAEAEESLQHYRNEAARLGFAPERVVMLRDPASDRVSGTESSAWVVLIPRDQDDATFDELWGTGWDNSLPF