NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209750_1002157

Scaffold Ga0209750_1002157


Overview

Basic Information
Taxon OID3300026237 Open in IMG/M
Scaffold IDGa0209750_1002157 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6822
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.534Long. (o)-110.7978Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000353Metagenome / Metatranscriptome1246Y
F038253Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
Ga0209750_10021575F000353N/AMLGMTTQAQVSGTELKVRIEKALTEKSLKKLITNLEKELNGEHSFLPHDVETQIRREIASAGVAVSQHGGWYRCIAAYLILPKIEELLQVKSMGGEQNIAPIVQKLRNEALRESLSTFGLEVPARYARTSSGTGRTRVRLSREQKQQLVENFLDALPTFEALHDVLGTLPKNTNLMVKQIRTLVKRYLSIANRLQSVATHE
Ga0209750_10021576F038253GAGMETHDNNMTGVQEELLRIIQSDEARELIENMVNRMAVIEEAYYRIRELREAVQPYIPENSEHDEEYWLAAYLVKPHASDVIEKFRQLREIQHKLAKLEEQVQEMDSKESSLENKLGNVDSAQENIGDNIYKLISEDADPYLSLGDSNLYDLLYESIREWAEKQLSAKSGT
Ga0209750_10021578F000353N/AMLDMMTQAQVSGTELKVRIEKALTEKGLKKLITNLEKELNGEHSFLPQDVETQIRREISSAGVAVSQHGGWYRCIAAYLLLPKLDELLAVKSTSEEKNVAPIVQKLRNEALRESLNAFGLDVPARYARTSSSTGRTRVRLSREQKQQLVENFLDALPAFEALQDVLDTLPKNTNLMVKQIRSLVKRYLSIANRLQSVATHE
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