Scaffold Ga0209750

Basic Information
Taxon OID	3300026237 Open in IMG/M
Scaffold ID	Ga0209750_1001230 Open in IMG/M
Source Dataset Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209750_1001230 Open in IMG/M

Source Dataset Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10126
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (9.09%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

10126

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (9.09%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.534	Long. (^o)	-110.7978	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.534

Long. (^o)

-110.7978

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000353	Metagenome / Metatranscriptome	1246	Y
F049663	Metagenome / Metatranscriptome	146	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209750_10012304	F049663	N/A	MRAKVLIEKALKQKAFRGALIQSSLNNREYASYRLTEYEKAYSNQDVYEKATLERMFSALPGTATTRGFPNYGVVLQLASLLANVSSFSGFLTIEKTIEQPNFVLHFMDLIGTNVRDRNQPSPVFPTVGPTRYDNSAYGLQTYTTPSTVTPLVINNTTFSTAAGLLANAAIPPIMPYTIKIVVKAYTGGSLVATEVFTDNGNGMLVSLGVSSGTITIDPATPIPHIARYGNPSLPPQSTGWDFTINSIQINGPTGSQLVAELSFAFNYTEPIYYPGQEQDERFTLNLTRVVAVNTKPAKLTIELNKQELAAISKSLSQDLQPVIVQRIGEIYNKMVNRYIVRKYMQRFVTDTVNYSGFVIIDVGSPIGGPGGATTPDSTYNQYIPILDRMRGGFEKVRQELHRKSFIANKPTALLCSPKLAYFLARSIMVEQSLWVEEKVTYINDLFGYYIGIPVLIHTELEALDTAFDTWARGTGRPMANSSLDFVTAAVGFAVAILPDNNLAPMVRATFLPPTNTPTVANFNNPLQEAFSMFYQEEVDVVAPELVVPFAVTNMPVS
Ga0209750_10012308	F000353	N/A	MRTAQLSRVRSLLRCMKLSLLQLTRRIFCLTALLTGNFYLLTSQRFPCAFVVMIDMTTQAQVSGTELKVRIEKALNEKGLKKLITNLEKELNGEHSFLPHNVEAQIRKEITSAGVAVSQHGGWYRCIAAYLLLPKLEDLLAVKSMSEEKNVAPIVQKLRNEALRESLSAFGIDVPARYARTSSVTGQTRVRIPREQKQQLVENFLDALPTFEALQDVLGTLPKNTNLMVKQIRSLVKRYLSIANRLQSVAAHE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209750_1001230

Overview

Ecosystem & Geography

Associated Families

Sequences