NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209903_1005923

Scaffold Ga0209903_1005923


Overview

Basic Information
Taxon OID3300026216 Open in IMG/M
Scaffold IDGa0209903_1005923 Open in IMG/M
Source Dataset NamePermafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil leachate replicate DNA2013-051 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2446
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)68.6137Long. (o)-149.3144Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046970Metagenome / Metatranscriptome150Y
F062651Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0209903_10059231F046970GAGGMKKMILAALLAALPAVAAEEFKPIKASESVTYPLPPMPLPAVATSNGKWAETEDSPALRVSRAWVKLGQAAGVERSDATKRLYTGWKNETAHSGPHSRAAQASYARFLAAYKQDLDQARGIYEGVLRDVDAMDSDGAGEANADGTSNGLAKDADEQIKAADRDDRLTNSACFLSPDTCQGNDPSDKALQDEIASLVRDTLEAGGPDGGLTLYALKRKAGLLALRAKVMGAVTQRAAARLATEVATQGDG
Ga0209903_10059233F062651AGGAGMHKTILIVSLLIAIAGCAHDPPPATAAHDWEHGLDGSLSAQIAPVGPIESDVSAYNLIRRREQERALGSRDTLVELDEIVGSSSQVLSSALALPLFQAGVYLGQPPIIDKACAAARRVTHPALRSSGNVETVLQGCGALAVGKQSNDPCSEGEKKLREAYAQLAANKATDAGHSAADGVRMLRDRCPKMMAPLRTPVDPSTRGFLIVWTLHANDAPPATFLAGLSAPGTAEAINEAFLRGVQAVKGLARNP

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