Scaffold Ga0208131_1134531

Overview

Basic Information

• Taxon OID: 3300026213
• Scaffold ID: Ga0208131_1134531
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 589
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077398	Metagenome / Metatranscriptome	117	N
F099428	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208131_11345312	F077398	AGGAGG	MTVKKKIDNQHKKPVVEITKATVQVKDKKVDVYTKAYNDTIKRAGSVYTASYALIDETIDDIKKMSRKVSTGDYSANNVYLILQDALKKVRLAEN
Ga0208131_11345313	F099428	GAG	MGTKLNVDPGSDIGKKLWEIHQKDEYTHVTNYKEAICINCFKKDAAS