NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207989_1032415

Scaffold Ga0207989_1032415


Overview

Basic Information
Taxon OID3300026209 Open in IMG/M
Scaffold IDGa0207989_1032415 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1575
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000659Metagenome / Metatranscriptome952Y
F010479Metagenome / Metatranscriptome303Y
F011337Metagenome292Y

Sequences

Protein IDFamilyRBSSequence
Ga0207989_10324151F010479GGAGVHEMKTFKQYLKEFAIQSTSDYVFDTPSGHSGSLKIPISGPMFKRIWPDTIRATVFHVTDLSGLKRLKKLEGGKKTISAFFSMMSRYMESGVATSGGVVVEMDADVVVSASSDIMSEVDK
Ga0207989_10324152F000659N/AMKTFTQYLEEASKYIVSKNPHDKKWYVMGHVGSNKWMPVSNGFKNKAQAQKWAKSQDKVDIAARGEISSA
Ga0207989_10324153F011337AGGAGLLRFKQYIAEIGVNPFQIVGKPAWTESLSTMLFDLPRAGLKDVKIPLSPAIFRRIWPKPVRTKVFHLTDGDGVPKVKKMQGGKRSISAFFNIEPIVLEDGIKSEGGFFLEMVADILIASQDDLASQPDKTGRRWVSLSSLMNKPTDADPGLGGGAKLKKMENDIKEMLINIIVDHSDITPVPNVNKAWSYLGKSTGGKEKSLIIKDYIDGMEKVMKKHSKVLGALLTDYTKKRIQEPDPDSGDKPMWDELVVNNFKIEKVHVVTGDDPEDWDETDFGLPIKVWNDRHDAADYIIRTVQKIKL
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