NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207989_1010695

Scaffold Ga0207989_1010695


Overview

Basic Information
Taxon OID3300026209 Open in IMG/M
Scaffold IDGa0207989_1010695 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3311
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019227Metagenome231Y
F023718Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0207989_10106951F023718N/ANRSLEELIDSYWEAEGEALESDDYSALENYLQGMGAI
Ga0207989_10106954F019227N/AMICSYCYKSQIMPKHDVGHWWNNESDSVVVCSDECYAQLEILVKEGTWLYHKPEAIFGKKKHKPSPNFEGPQSLTDKQFTGDLGKFLK

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