Scaffold Ga0207989_1006735

Overview

Basic Information

• Taxon OID: 3300026209
• Scaffold ID: Ga0207989_1006735
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4488
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002874	Metagenome / Metatranscriptome	524	Y
F007052	Metagenome / Metatranscriptome	359	Y
F012279	Metagenome / Metatranscriptome	282	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207989_10067354	F002874	N/A	MKDKIDLSLNRSLQELEDSYWEFIDATEGDDSSVWSSSIQEDFSALEGYLMKMDRV
Ga0207989_10067356	F007052	AGAAG	MRLKMENNETYFVARLFKKGKFLSSEIFESLEEARVWGMKESKRLISHLEMLRMTNVGDICVKIDKHFFVYESSLEELMKNSVRVI
Ga0207989_10067357	F012279	GGA	MTERERVEGMLIESRLEELKENAANLAAMETAVELCRDRKWKLVEELKELGHDFTATTEGMDVVLSAPPSMRF