Scaffold Ga0207989

Basic Information
Taxon OID	3300026209 Open in IMG/M
Scaffold ID	Ga0207989_1002911 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026209 Open in IMG/M

Scaffold ID

Ga0207989_1002911 Open in IMG/M

Source Dataset Name

Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7742
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (85.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

7742

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (85.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: Eastern Tropical North Pacific

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006865	Metagenome / Metatranscriptome	363	Y
F009609	Metagenome	315	Y
F013774	Metagenome / Metatranscriptome	268	Y
F013775	Metagenome	268	Y
F029469	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207989_100291110	F029469	AGGAG	MSNKPEHTTYFREIIRRLKEMEIEFKKDPDPDKEVYGELDGKIELMELPFPADMFDRLSSDEKETLFIWLNRRNMPQA
Ga0207989_100291111	F006865	GAG	MGKFKNRIIKVNDILYECLGVMDVERSNDKGTEYWKERWGADNVLRNGNDYYYCRTIIDAEFKDI
Ga0207989_100291115	F009609	AGGAG	MNLQGKKVKVIKTITSVNGALHEGEIILVERRENGHWRCRDNMGRIFYLEESNLKIVNKK
Ga0207989_10029112	F013775	AGGA	MVEKRQYESIKEFAKDYRTEIIPMLKSKGFTLRINTSKGSYYYDGRMNFVIKGVPSNFYVWTHEYNRYSKTEKSQKLLGVIRDRVNSILVESNLDVDMNFDYDRNVRYKPIPDGWDDDDRNY
Ga0207989_10029119	F013774	N/A	VNDKLLELKRKKLQRQILYLRTELEETTFIFQDSLIEFEDEFGDYFKNQSNKDHKKVTTDPPEFDIPREDVNIVFKKIAQKTHPDKLIKEDTLSSTYKEKVDMYKEALGSVENKDWSRVIEIAMELDIDVSDVKNDDSDYLNESIKALTDKIKELQNTYAWIWYHAKNKENVKQMILQSLGLNKEKENGNTR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207989_1002911

Overview

Ecosystem & Geography

Associated Families

Sequences