NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208895_1044003

Scaffold Ga0208895_1044003


Overview

Basic Information
Taxon OID3300026207 Open in IMG/M
Scaffold IDGa0208895_1044003 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV82 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1288
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005103Metagenome / Metatranscriptome412Y
F005400Metagenome / Metatranscriptome402Y

Sequences

Protein IDFamilyRBSSequence
Ga0208895_10440031F005103N/AIRIYIDGKEMLYSHQNIVAAINNFLPYLTNDDLTTLGQDILDLFNHREAKEAESKIEVEKHSWPYPDTKKQT
Ga0208895_10440032F005400N/AMKRKWKCTDAHPNSPPLGKNHMGFKDLTHTNMCYRCSYCDQGYQNIYWLQQIAIEYLICDRCQKYYRLTAKDMIELQYVQNRQEWKDADCWPTNGFFPYPIGFDI

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