Scaffold Ga0208406_1068888

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208406_1068888

Scaffold Ga0208406_1068888

Overview

Basic Information
Taxon OID	3300026205 Open in IMG/M
Scaffold ID	Ga0208406_1068888 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF89A (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	841
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000060	Metagenome / Metatranscriptome	2944	Y
F019024	Metagenome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208406_10688881	F000060	N/A	MAQKFNTEFNYRYQVIGCTPWEKIKTLKGFLEGRIRAQALEEVGKLKHQAKLSKLNYLKNGGEGLEHEILELKAEILEAESHEETLKEAFELTKDEIKILKKLLKELYVIAEPTRIKGYTDEEMFEANAANEFTVDIGREIQAEMIANGRPSAAKLRNAMSNPHTWNALKQIGLIPKQTKILEGNTNPKLKIELKGVEDETI
Ga0208406_10688882	F019024	AGGAG	MKLYKLEASNFEAFFGGPEPENRIQRNVITIAQTPSCDAFLYLSNETYDELELLNSVPTGFDFT

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