Scaffold Ga0207985_1013023

Overview

Basic Information

• Taxon OID: 3300026203
• Scaffold ID: Ga0207985_1013023
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2236
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F002192	Metagenome / Metatranscriptome	585	Y
F036730	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207985_10130231	F036730	AGGAGG	LAEEFVIKSSLIEDKINQLLPSQGGFQPGVDFSASTMVIPIVDLTETAEGSVLREDLQKSLSL
Ga0207985_10130232	F000613	AGGAG	MPLVKKKVSIAAGAVSDQILAGTTYEYVDPGTRIVVAAAVDTAGTATADTTMDFTVNNAEFAKDASVSTIVSGQPFGWNGTGYVLNDMVTTGQVRNRPIIQFKNGTAGTRTVDVAVFIGG
Ga0207985_10130234	F002192	N/A	MDHLLLYSSLFIAVLALFFGLYACGRVAKINQATKDLEWDAIANITGDLATTKKTIQTLNNRINGMHSPKVAEQELLMQLMQNKQNSNPNGKIIGG