Scaffold Ga0207984_1065932

Overview

Basic Information

• Taxon OID: 3300026202
• Scaffold ID: Ga0207984_1065932
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF43B (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 910
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024807	Metagenome	204	N
F042567	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207984_10659321	F024807	N/A	MKSVKPHLQHTGTRMTKRMLPFNLVYHDKDQQLTLALHDNPVTLTRDEVDGLIFHLDSFLFDMDRERKPKPSVEGADIHAEAHGEMLMAQFDDDPNPYHGDYSED
Ga0207984_10659322	F042567	GGAG	MTEEKINRRLKTDEEKAKDQRDLSEAYNRVILASSNFFEHYGYCEGDYGDIGQKHYDQMKDANDRLMNPKQRMGETHIVIDWSELTDEERKTSSSAYWYEND