Scaffold Ga0208127_1003184

Overview

Basic Information

• Taxon OID: 3300026201
• Scaffold ID: Ga0208127_1003184
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7613
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050370	Metagenome / Metatranscriptome	145	N
F052566	Metagenome / Metatranscriptome	142	Y
F077246	Metagenome / Metatranscriptome	117	N
F091977	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208127_100318412	F052566	AGAAGG	MLDKHVYKRKDGGETWCYGTIEWDSSFSVVCQDEYKDGIWTGDLGFEPENWDQVCEYLEKYYDPQIEQLETC
Ga0208127_100318414	F050370	AGGA	MAYIHEIYFPCSVGRKTFEDAKALLTNIHGGCTAYNGVGHWQNEGENTDGTKNYVQLREEVWIIRVVSEDATFSGLNLIEAELFKANEKCVMSTSQEIAVRFNYND
Ga0208127_100318421	F077246	AGG	MERSNNLSNQKLVITPESWDDIQDYIETFEYKAYATVLALMVNNYILHQFSQMGGYAFSEWKQEYLKDVN
Ga0208127_100318422	F091977	AGGA	MTLTEKKIQRMVDNYQFMQTCFVPYDDKTPVEQMTQLYHFLRDQMDDVERIDRQEASNRRHKLNSPAYAGKAGH