Scaffold Ga0208127_1001463

Overview

Basic Information

• Taxon OID: 3300026201
• Scaffold ID: Ga0208127_1001463
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11699
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020254	Metagenome / Metatranscriptome	225	Y
F021734	Metagenome / Metatranscriptome	217	Y
F049421	Metagenome / Metatranscriptome	146	Y
F070879	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208127_10014631	F049421	AGGA	MIEVIVAIIGLGVGDYADPLDLNLEDRDKKVLMQTSCEETTTQDAYGQISTMKTCRTMKTITTTEEQD
Ga0208127_100146312	F021734	GAGG	MQVLAIIGLVVGVGYGMDNDWKVAKGYKSYKECRAENPKFHNTMTQWKYDPCNLGAYYIKNNT
Ga0208127_100146313	F070879	AGAAGG	MLGFKTFSGSPIASTGSGAIVDQKADFYAEALLQANANADWNSNPNIIGEAMLNTDSTIAGSGWVRQNPSTPEWDMDKSQDWNQIK
Ga0208127_10014632	F020254	AGGA	MEMLWTVSAPAWQWIVGVAVALYVWEEYLEHVWYKFKHWVTNHPHKK