Basic Information | |
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Taxon OID | 3300026198 Open in IMG/M |
Scaffold ID | Ga0209313_1003466 Open in IMG/M |
Source Dataset Name | Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_B C13 SIP DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7778 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (96.15%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Washington, USA | |||||||
Coordinates | Lat. (o) | 47.6525 | Long. (o) | -122.3049 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F022442 | Metagenome / Metatranscriptome | 214 | Y |
F031138 | Metagenome / Metatranscriptome | 183 | Y |
F034940 | Metagenome / Metatranscriptome | 173 | Y |
F054898 | Metagenome / Metatranscriptome | 139 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209313_100346611 | F031138 | AGAAGG | MTKRNNCVGPCATACKPGAGTDTRNGTFDRILVAATEHAAREVGLPGRADRMIACRSCGAPTASSDGICRDCADAMRAERSEALSALCRVHRVRRVENLPVSVLEEMQVEWGRC |
Ga0209313_100346623 | F022442 | AGGAGG | VTFVPIGEARLDLYTDAMLLDIGPDTFVVPLARLADLTAHRRREVVVSRRYWGDTPGTFRDVEQGIRLQRSQTGRSLMLIVQGCVYSMPVYQVLEVKDGIRESCTISMLVTDARQLDDAHSRQTVLEVWA |
Ga0209313_10034668 | F054898 | AGG | MKAKLKIEELPAGYRCRVCGRRFRTEEAAFVHQSYDCSQNVRTMVERW |
Ga0209313_10034669 | F034940 | GAGG | MGNDCWYYRAQYAGMTKVCMRQSIVECGRIRRFGLCPKPPDSEEWRRCGFAIGQHEIPARYEG |
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