Scaffold Ga0209313_1003466

Overview

Basic Information

• Taxon OID: 3300026198
• Scaffold ID: Ga0209313_1003466
• Source Dataset Name: Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_B C13 SIP DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7778
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (96.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location

• Location Name: Washington, USA
• Coordinates
  • Lat. (^o): 47.6525
  • Long. (^o): -122.3049

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022442	Metagenome / Metatranscriptome	214	Y
F031138	Metagenome / Metatranscriptome	183	Y
F034940	Metagenome / Metatranscriptome	173	Y
F054898	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209313_100346611	F031138	AGAAGG	MTKRNNCVGPCATACKPGAGTDTRNGTFDRILVAATEHAAREVGLPGRADRMIACRSCGAPTASSDGICRDCADAMRAERSEALSALCRVHRVRRVENLPVSVLEEMQVEWGRC
Ga0209313_100346623	F022442	AGGAGG	VTFVPIGEARLDLYTDAMLLDIGPDTFVVPLARLADLTAHRRREVVVSRRYWGDTPGTFRDVEQGIRLQRSQTGRSLMLIVQGCVYSMPVYQVLEVKDGIRESCTISMLVTDARQLDDAHSRQTVLEVWA
Ga0209313_10034668	F054898	AGG	MKAKLKIEELPAGYRCRVCGRRFRTEEAAFVHQSYDCSQNVRTMVERW
Ga0209313_10034669	F034940	GAGG	MGNDCWYYRAQYAGMTKVCMRQSIVECGRIRRFGLCPKPPDSEEWRRCGFAIGQHEIPARYEG