NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209313_1003466

Scaffold Ga0209313_1003466


Overview

Basic Information
Taxon OID3300026198 Open in IMG/M
Scaffold IDGa0209313_1003466 Open in IMG/M
Source Dataset NameAnaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_B C13 SIP DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7778
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (96.15%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location
Location NameWashington, USA
CoordinatesLat. (o)47.6525Long. (o)-122.3049Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022442Metagenome / Metatranscriptome214Y
F031138Metagenome / Metatranscriptome183Y
F034940Metagenome / Metatranscriptome173Y
F054898Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209313_100346611F031138AGAAGGMTKRNNCVGPCATACKPGAGTDTRNGTFDRILVAATEHAAREVGLPGRADRMIACRSCGAPTASSDGICRDCADAMRAERSEALSALCRVHRVRRVENLPVSVLEEMQVEWGRC
Ga0209313_100346623F022442AGGAGGVTFVPIGEARLDLYTDAMLLDIGPDTFVVPLARLADLTAHRRREVVVSRRYWGDTPGTFRDVEQGIRLQRSQTGRSLMLIVQGCVYSMPVYQVLEVKDGIRESCTISMLVTDARQLDDAHSRQTVLEVWA
Ga0209313_10034668F054898AGGMKAKLKIEELPAGYRCRVCGRRFRTEEAAFVHQSYDCSQNVRTMVERW
Ga0209313_10034669F034940GAGGMGNDCWYYRAQYAGMTKVCMRQSIVECGRIRRFGLCPKPPDSEEWRRCGFAIGQHEIPARYEG

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