Scaffold Ga0209312_1028553

Overview

Basic Information

• Taxon OID: 3300026195
• Scaffold ID: Ga0209312_1028553
• Source Dataset Name: Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B C13 SIP DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1854
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location

• Location Name: Washington, USA
• Coordinates
  • Lat. (^o): 47.6525
  • Long. (^o): -122.3049

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064748	Metagenome / Metatranscriptome	128	Y
F078879	Metagenome / Metatranscriptome	116	N
F103501	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209312_10285531	F064748	AGG	MKMYRFIGNMEDVTPCGIMDEGCIIAGCKGKVWGQCHFDPNLNLLSSGSEYYEEVRDTVFRVEKDNLFSSGGLNPLFDNKGKIWMKASHLKKHFEQSIGYNYETKQSIPLYKEYPYDAEGRASRRHVD
Ga0209312_10285532	F103501	AGGA	MIKNIVLEGVVSYDDEYDLWCVGEDFIENIISDFDGKKVLVTITVI
Ga0209312_10285533	F078879	AGG	MTPDVSDEVKEGYDLLEGIGIVERTESGQYYPTEVGGAIIYAVLCKQMLGASEDDYKSVESQQVMMNRLEEMDLVEQGDESFIITIEGFTAFFTNLAYDCPYREEFLDWLALATAELAEVMEQP