Scaffold Ga0209312_1024165

Overview

Basic Information

• Taxon OID: 3300026195
• Scaffold ID: Ga0209312_1024165
• Source Dataset Name: Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B C13 SIP DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2094
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location

• Location Name: Washington, USA
• Coordinates
  • Lat. (^o): 47.6525
  • Long. (^o): -122.3049

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005744	Metagenome / Metatranscriptome	391	Y
F042353	Metagenome / Metatranscriptome	158	Y
F054898	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209312_10241651	F042353	N/A	RDDLEHATVSSAMVLVEEGGRIVINELVLRLEDGRMVTLMPLGVPAETAVDLRLDIYDDHLPGGHGWREVTVAEDYAEEIADMRHAWHPEPDTPEGARL
Ga0209312_10241657	F005744	AGGAG	MDETFEIIKAGAPYGPPEQALYRIQQTYPDGSGARLNVDWEGLLQLHELIHDRIALEGRVCETCGTKGCHRPATWEIECRGAGVSGRLIYACDEHAPDEAILSPQDEIRRL
Ga0209312_10241658	F054898	AGG	MKAKLKIEELPAGYRCRVCGRRFRTEEAAFVHQSYDCSQNVR