Scaffold Ga0209312_1018301

Overview

Basic Information

• Taxon OID: 3300026195
• Scaffold ID: Ga0209312_1018301
• Source Dataset Name: Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B C13 SIP DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2574
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location

• Location Name: Washington, USA
• Coordinates
  • Lat. (^o): 47.6525
  • Long. (^o): -122.3049

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021528	Metagenome / Metatranscriptome	218	N
F051104	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209312_10183011	F051104	AGGAG	LFELRIAEEIEKEAVLSQDLIQEGFSHAFKAGELIQEVKSMLHSEGDLEQWLEKNCSKVERQVAFNCLKLFNGETVKVEATTKEGKNQ
Ga0209312_10183012	F021528	AGGAG	MIDTLKLMLNEYEISDDSEIRVQPASYELGTGSKVEYPLFQTPSHGAHYGSKAYLNEDNWNLTLKPLAGGKATGAFLQLSVPKNYYGSNFYSVGEEGTKAVLRKVEGELKEKGVHTPLNEASLSRVDTFKNIEPEEPFSSYYSLFSLLKARKAIQRGYGTTFLLSNTQQEFCVYDKLEEMRKRKLETANLPNTMRFEHRLLNKQKVQNVYGFGKVEDLFRGGYAVVKEKQVESWKGSLFNFTAEELVVLGSKQLEQEMRRFKERSPSGWFSKFLKAYGAYYLASHAGKEVIVEALQNFEADRMKIWRAVQVFEEAERELMVLKQEEGSNKTLGVLYEELRRKVCLN