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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026194 Open in IMG/M |
| Scaffold ID | Ga0209509_1002848 Open in IMG/M |
| Source Dataset Name | Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_A C13 SIP DNA (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11104 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (94.44%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Washington, USA | |||||||
| Coordinates | Lat. (o) | 47.6525 | Long. (o) | -122.3049 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F029451 | Metagenome / Metatranscriptome | 188 | N |
| F036251 | Metagenome / Metatranscriptome | 170 | Y |
| F040648 | Metagenome / Metatranscriptome | 161 | Y |
| F054066 | Metagenome / Metatranscriptome | 140 | N |
| F079824 | Metagenome / Metatranscriptome | 115 | N |
| F101228 | Metagenome / Metatranscriptome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209509_10028481 | F036251 | AGG | MSAKERQKVLFGDTGIVAPIDTTERIPLADGVVFVAQRIEVRQSNKYGEYVVFDGEDLDGKEFHAYSTSSVILQQAKALLEKYGGENGDLTHDVLCGVKADLSESTGRRFYTLV |
| Ga0209509_100284810 | F029451 | GGAGG | MAVDLEDLIASSSSKAGHPSIIEALLSTVDSIFTNNRMLQRSRLSARNIRGVVRVIGSQAFLRARLERSYKPFLDPDTGEFTYNRYDNRVLTAICEGALSGRISLDGKSREEIIRIFQAVGNTAQEESVGRGGGILGRFDY |
| Ga0209509_100284811 | F079824 | GGAGG | MIYGFFGSIPGCPHSRGNHALRGNGKTLCLTFVGYLDAQRGRRVISNYKTSFSEYVAVDEIARMVVEENIRDTTILITEMQVYLNSLGVNSSDLKEFIGSVVGQSRKRNTDIHYDTQRYGDIHPRLRVQTDRAFLPRKFHVDGEPCHRDRCEEEHVIYLFQHDPYLHEEVIRLNAEAFADLYNTDEIIAVPKK |
| Ga0209509_10028482 | F040648 | N/A | MTENVMEVLEVRHDIDVLLETARAGVTALETATTKIHIPTREMAKIQTAMIKMRQAANYVENRAHNLSVKPDKITKTALKEALKDASQEQIERAYTILSGLDDAYETAKEDLGEGGAMTDEETHYFIQVKGDEE |
| Ga0209509_10028487 | F101228 | GAGG | MAEICEIRNMVRDIWNWVAERWAYFTVMGIVYLMIYYASGSPIQAAFGILLLICMYLGILWVDRLPRDDRLFWKRLVGITVILLAITVAITYNPVSALTITGEPAGDQIHWEITDGEPPYTVFVNGVEIVSGYPGTVFTTDSEPGRQYTAVVMDNQTVADATVTGEYYTYPLWVWLLFAALIACLIISIWLPYAAFGAAIAGGFLLLLIAPNPDYAPYLRIFAGAAFIVGLAGIAGRLQ |
| Ga0209509_10028489 | F054066 | AGG | MFRTTRKAKELNRFRVGKGSPGLKAVMYRMLNKPYLDIRIYRGYREVTRIVTPDKGMRRFVVDEVGAFVMPNEEQMLRQLHDRYALYINYNINSSAPGQVTEELEPIAFTYPPLSPAEFQTELEAQTVADLLAETEKDNSWIWLLAGGAVLIFIMILIFGGA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |