Scaffold Ga0207986_1037423

Overview

Basic Information

• Taxon OID: 3300026192
• Scaffold ID: Ga0207986_1037423
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV89 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1220
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004908	Metagenome / Metatranscriptome	419	Y
F011291	Metagenome / Metatranscriptome	292	Y
F064626	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207986_10374231	F011291	N/A	MDKYEINVWKDAELLSKEVVEFESNEKCYDYVMDKHYAPGTWTGSHQNKNGVTLNRPPLGIRITWAKRTKDNYIYKPKKLTAEEKKLQRGLY
Ga0207986_10374233	F004908	AGG	MERQEHQLTKKIIDLHQVDDGAINPKTGLTEKPSWYVRFEDMSDRVLFRSKLLELLSMGFRKTVENFKAGKATTTQGGEARFWVVVFQDYEVRLQTKSQIMDIVTEGHRHREDDDNAKFERNGHDKITLE
Ga0207986_10374234	F064626	N/A	KMKELRKVTEKIKKVLINAERGNEEFPWIVDKLSLIKMYDMGLPIHMVLGLIDEFVEDVEERKRIKALEGFDEEHVRKVYDRVNVKWNDRNIN