Scaffold Ga0208405_1011137

Overview

Basic Information

• Taxon OID: 3300026189
• Scaffold ID: Ga0208405_1011137
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1445
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009691	Metagenome / Metatranscriptome	314	Y
F023367	Metagenome / Metatranscriptome	210	N
F041244	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208405_10111371	F041244	N/A	NAVAVEDWESFTELTPDDLSHLFGYVFKMCILHRDYVKVGYYSKVFGGTNND
Ga0208405_10111372	F023367	GGAGG	MTKKKFIFEEKFIGYAEVEIYAENEEDARLQFQNGNYQYYDVSDYTEGHELISVKEEEPVNYYQGA
Ga0208405_10111373	F009691	AGGAG	MKSTLNSKEYVTFARRFVKETVATMDIEELRSIVTDRIHEEIQEGENTYGQDGAFEEMMSWDEDVFLNVAKDFELEFEGV