Scaffold Ga0208405_1008122

Overview

Basic Information

• Taxon OID: 3300026189
• Scaffold ID: Ga0208405_1008122
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1706
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013897	Metagenome / Metatranscriptome	267	Y
F025518	Metagenome / Metatranscriptome	201	Y
F049033	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208405_10081222	F013897	AGGAGG	MNLSKDQLLALMNTIDYATDNDASYEEYTIIRSGTADLEPIRDILYNEYRS
Ga0208405_10081223	F049033	AGGAGG	MSYTNNELALLDLISNINKTFYYLGEDGDDVDQFEIDKLHKYVNQFASTVTISDSQAEDVYL
Ga0208405_10081225	F025518	GGAG	MSDKLFHKTKTSLSEESKQYLPTVKEFYPHLDDLLTDRIAKYCAVYSKGTDKASIRQAINDFEEVFDTELTS