Scaffold Ga0208405_1005554

Overview

Basic Information

• Taxon OID: 3300026189
• Scaffold ID: Ga0208405_1005554
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2091
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001504	Metagenome / Metatranscriptome	681	Y
F009691	Metagenome / Metatranscriptome	314	Y
F013094	Metagenome / Metatranscriptome	274	Y
F030123	Metagenome / Metatranscriptome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208405_10055543	F013094	GGAG	MISAFFTGVLVAIPTSLVAMKLLNSSLFIDNSELRNINEKISIVIHQIDEYREERFAEKEVTDK
Ga0208405_10055544	F009691	AGGAG	MKTELNSKEYVTFARRFVKDLVMDMEIDELRRIVTNHIHEEIQEGENQFGQRGAFDEMIGWSEDIFLSVAEDFELEFEGVQ
Ga0208405_10055548	F030123	GGAG	MSAISTDGMDKWLDDAYPDLDRRKANMIYEIASLIKDDPDTAPVLIEELVEVMFDEQIDHLEDVIVNHFGVEVYPE
Ga0208405_10055549	F001504	GGAGG	MTYDSEHYYAVQTFLEDDELCKIWNIIEIAMNREGYDVENAELSMRLYDQELTENIEHDMENSL