Scaffold Ga0208405_1000883

Overview

Basic Information

• Taxon OID: 3300026189
• Scaffold ID: Ga0208405_1000883
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5159
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017325	Metagenome / Metatranscriptome	241	Y
F018738	Metagenome / Metatranscriptome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208405_10008832	F017325	N/A	MQDYFEEVYKALKDFHKYDKYNKQIKPLYMLIKVDVDADIVYDQCEADKYATNHCDKMEYELVDHFYPDELAYPYIAK
Ga0208405_10008834	F018738	N/A	MTTLYRYYCADTVCGRHFCFMASDDMEAAYRADTMAQEWYNTFLKDVYLDKHNNPHRRYRPNDKEILSQPVE