Scaffold Ga0208405_1000517

Overview

Basic Information

• Taxon OID: 3300026189
• Scaffold ID: Ga0208405_1000517
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6650
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (35.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007770	Metagenome	345	Y
F016956	Metagenome / Metatranscriptome	243	Y
F039679	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208405_100051714	F016956	N/A	MFETQEIWSVPAEARLAIIDLALTHIKKVQLDPEVETEGDNFDYWNSYDLGDGNYIDYNIHCGDEWCVVKQDGSGEYEYTDPSTWSWDVCAYAVDPPTKDNPFHQMDTDREHYLFNFNKDGNNEVVFED
Ga0208405_100051715	F007770	AGGA	MSGEGLSVSFRRTQATTESNEELLRRFQNIIYRSRVMKHMKWYGKDHSVDILEHGDDNRQKFEQEYVAIKDTFQFEISVYESWYEDADLYESHEVEDSFVSLARKFAENHNLMYFSNGFPAEWIETETIDGEKCWNHFIVKPNDKNIDKICEVWYAYGIKKLHNDYDGLWANTRDQIKGLMTI
Ga0208405_100051718	F039679	GAG	MKENSHLTIREDLIEEGLSVPVWFLDYKEDTHVEDTPTLDIDCDYCTDGEELNDYGANIIVKISDSSRKDKYGNPWKDRLAFAMSVDFDWN