Scaffold Ga0208405_1000260

Overview

Basic Information

• Taxon OID: 3300026189
• Scaffold ID: Ga0208405_1000260
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9385
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (93.10%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000379	Metagenome / Metatranscriptome	1211	Y
F005266	Metagenome / Metatranscriptome	406	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208405_100026025	F005266	AGGAG	MSVHIRYRFLKEKGDYLKDENMTRGYTLVESYTEHPFHEVLKEFYKDFKGRGVQIFNIWRTPAGEANYRMEEEERLSWTNSGN
Ga0208405_100026029	F000379	AGGAG	MQKIDYTNKHDIMVGYIDDSQNVVAVETGWVTTPKHMTQVLMGQYNSKEMAQSLVDSPTLMPTFKKDDYWYVDGFGDVIESNLSWNKEEMRKNVGHLFLFMKGTWQYSDNGIDWEPAVECFKEVA