Basic Information | |
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Taxon OID | 3300026187 Open in IMG/M |
Scaffold ID | Ga0209929_1018643 Open in IMG/M |
Source Dataset Name | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2175 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration. |
Source Dataset Sampling Location | ||||||||
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Location Name | South San Francisco, USA | |||||||
Coordinates | Lat. (o) | 37.4973 | Long. (o) | -122.1295 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000464 | Metagenome / Metatranscriptome | 1105 | Y |
F010001 | Metagenome / Metatranscriptome | 310 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209929_10186433 | F010001 | AGAAG | MQDRASKDEVRLLRAQIGNLEVQVADYQQIVKELSNRLNLYENKHGTVFRSGKKNSTQK |
Ga0209929_10186435 | F000464 | N/A | MQYYILYMKLSQQQKIQMYSHHDHDMDFEDEFWPILGILLAILGVWTGIIHLIDWLTIDAIPWWMEPFTITPVIFVIIMKERFDSLNPLHWWPMFWGYEAKLPEEDRITIRPLDTERIMDEHGGRLNVYIVDYEHIKFRRRKDAVIFGLRYF |
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