Scaffold Ga0209929_1000249

Overview

Basic Information

• Taxon OID: 3300026187
• Scaffold ID: Ga0209929_1000249
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20683
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (64.10%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4973
  • Long. (^o): -122.1295
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010091	Metagenome / Metatranscriptome	308	Y
F022317	Metagenome / Metatranscriptome	215	Y
F098225	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209929_10002491	F022317	N/A	MATLKIDTKTIAPVIFTILISAFGWVFNSIEEIKSHQNACDAMVMEINSELDMLESNFTELLFKLNG
Ga0209929_100024922	F010091	N/A	MSIMNTMKDIDKLLSEAETGKISKILDRITEDAKPFWLGCEERVLAGRELKPYVVSRLLREHFGIKISESAVRNHFLNLVKDAE
Ga0209929_100024923	F098225	N/A	VPNSKAYPYPEIVTGEKWEVVGTVNNSPEGSTDNLNRQMTVPLDRECEECGINHSRMIRRHELGHAKWSPKTMGKLKPGVRAEAVHVLEEVRINHLLYENKLALSEPSQCLDMIQQKANKLVYESGIAEIILMGLASRWRVPDNDANRRYASYKYNDEWVVMSSAMNMIHNDDTVTEYRKNQIHYAQKVIMMYYQNITNHGHGQTISYRKVQKYAEPLSAILDMFRDAPTQDEIYKPKPKPNTAPGMSESEGKSEESNELGGGSLEQRTRNDLADMLYQSTQGIGKWGEMFIHQPPLTVNLQGRLKGGRAYRPADFGYNPKYINRYCVDKKIFKQKMTQLGGTILIDASGSMSFDGEDILEIMQLLPAVTIAMYNGTGVTGNLRIIAKNGKRVSEKYLDTHSGYGNVVDGPALEWLGTQPARRIWVSDMHVFGAYGDSSGFNLLAEVNKTVRKYNIINLRNIDEVKEHGLKLNM