Scaffold Ga0208128

Basic Information
Taxon OID	3300026186 Open in IMG/M
Scaffold ID	Ga0208128_1003811 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF51B (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026186 Open in IMG/M

Scaffold ID

Ga0208128_1003811 Open in IMG/M

Source Dataset Name

Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF51B (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4622
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4622

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: Eastern Tropical North Pacific

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014929	Metagenome / Metatranscriptome	259	Y
F020653	Metagenome	222	Y
F023792	Metagenome / Metatranscriptome	208	Y
F044922	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208128_10038111	F044922	GAG	MESILSGGQDFLLPGLSYDLSGDQASYVVSRRQSQINSNVPTAGPNDVRQVTFNIADPSGFLDLSSLCFQWTCVNSHATAAMQPLSAVPHCCWSRMIFSISSAIAEDIQYLPRTEEMLNRFLPYEKRRAAAAMGFGLASSSENGADHLARTVAANGGEQRVVWRPLSSGILNCGKLFPGMLLGASGLKITLEVPVASEIARNHANDSQTFSYKDLVCHVDSLQLEESISSQYANMLLSGRSIMIPYQTWDNTLQHLTVQTGSQTCNVAKNFTRLASVFASLAQEEPTVTADLAGVQGKLQNQFYLCDQTAANGDVESYITINNKRMPDFNTIGCQMHMKRLLSAMGTYSSVAHGSNINDVAYGCVKGTAAKSWVAAFDLEKAAHHGATSSGESLATGGILSINLLKVGSAAASPSRAYINCLYDA
Ga0208128_10038113	F014929	N/A	MPKKLDKLDHKYNEKLAKIRKSNVERHAGYENTMKLRANIQRFQRNATYDMELQRLRGATAQGHIAPHAHKRVAELKNLLAK
Ga0208128_10038114	F020653	N/A	MADIQEIPLDIAEEVQDIVEDIAEAKAEEESEPVVLEEVKPVMKPKAKGRPKGSRNLQPSKPRAKKTQIQEAPVEAPVKETYEPSSPKRNLRIPTDPTSSEVAAAMLKLLQDQSYSRQSRKQRLYSSWFQ
Ga0208128_10038116	F023792	N/A	NAWRQTRGFLKSTYHEGKKWANMIDGYASLFRKGLSAAAPMLQDLGAGEALGSGVKALQSYDTVRKQVMDVDERGREHVGRIARAIT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208128_1003811

Overview

Ecosystem & Geography

Associated Families

Sequences