Scaffold Ga0209942_1016736

Overview

Basic Information

• Taxon OID: 3300026157
• Scaffold ID: Ga0209942_1016736
• Source Dataset Name: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_A_D2_MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2742
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4969
  • Long. (^o): -122.1331
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007072	Metagenome	358	Y
F042291	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209942_10167363	F007072	AGGAGG	MLERRSITEYNKEKRKGQISLGDAPSVVMIVGFVFLIMATIAYVSEQYGDALTENGSAANITDDLESELSDNTSIAGIVLTISLVGIVLSVLIGIFVSSRRGGM
Ga0209942_10167367	F042291	AGGAG	MPIYQAYNKNIKAWVKYKFAKGKGFKPLNVKEREPKVPFKGIPKKGQRRKK