Scaffold Ga0209951_1012070

Overview

Basic Information

• Taxon OID: 3300026138
• Scaffold ID: Ga0209951_1012070
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1909
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4971
  • Long. (^o): -122.129
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011052	Metagenome	296	Y
F039828	Metagenome	163	Y
F078648	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209951_10120703	F078648	AGGTGG	MIKLPTTTWIELYSELSQYTEARAFPHRNPYNEDGSRRAYTEDDFVKIVNDVEEIMSQFFEKEND
Ga0209951_10120704	F039828	AGGAG	MNISDMLCDMYDIKQQVKQAKLYDKPKDNDGSSFTVGDCIENVIDQLTQKYNTTREIK
Ga0209951_10120705	F011052	GGAG	MDINKYYEQLEGFRITKYLGESRDGFPQFHLTKYGYKDVLAEVSADEEGNFGGVLFLSEMENV