Scaffold Ga0209951_1001355

Overview

Basic Information

• Taxon OID: 3300026138
• Scaffold ID: Ga0209951_1001355
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5274
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4971
  • Long. (^o): -122.129
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002502	Metagenome / Metatranscriptome	553	Y
F021020	Metagenome / Metatranscriptome	221	Y
F034945	Metagenome / Metatranscriptome	173	Y
F062573	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209951_100135515	F034945	AGGAG	MGDRANVGIRGTDGNTIYLYLHWGGTDRHEIVANAIAHAMSRDGDEAYFTRIFISRVIDRDWDKETGVGLSVNKLSATGDGYDVPIYNYTTKKVEVHEEAWDKAGGFVKFTDIEYPRDMYLAEYGVRGVGAYV
Ga0209951_100135516	F021020	AGGAG	MSDVINLRNTVMTENYDLNIWDREGYETNYEKEGWVINVYTYPAVGSPYGSGTMLEDRTITLTPTEAKRLTLGWGEDLGGDYTPDADFWLDKDTFFETYTDIPERVANLLWAL
Ga0209951_10013555	F002502	AGGA	MNAVIGQPFTTQSSGVTGVVQEIVKNATGSSRVRLELSNGDTRWTTVK
Ga0209951_10013558	F062573	AGGTGG	MAKKKLKEYEILEVRGFIVHAFDEKHALAKFGRYDYVSEGDVWPEVRELGPVNMSGTGPG