Scaffold Ga0208763_1000149

Overview

Basic Information

• Taxon OID: 3300026136
• Scaffold ID: Ga0208763_1000149
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15502
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (94.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024570	Metagenome	205	Y
F031530	Metagenome	182	Y
F066845	Metagenome	126	Y
F095345	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208763_100014915	F095345	AGGA	MSELRIIKEQRFYDQYGNKKFAMLEEGQTVKIERWLNAGRGPLLCSVVDPSEVSKDFGVHDGMLVEVDWEDLGFE
Ga0208763_100014921	F024570	AGGA	MNYVAYEIKRSKETATGTRYLVRCNRLGKYAITTWVGSTGSSMGTVECQGKRDYVLKKWNKIVGSRQKFH
Ga0208763_100014926	F031530	N/A	MMDFVVYKSEADNTGRLVELVHNKHCEVYEVIVDGIPVFNCNDYSTAEHEFNMECV
Ga0208763_100014929	F066845	AGGAG	MINNRKAAQLKHNASVKRHADVFTGCLSAGTLKQIHKKIKPLKILKKD