Scaffold Ga0208763_1000087

Overview

Basic Information

• Taxon OID: 3300026136
• Scaffold ID: Ga0208763_1000087
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20747
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (90.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000896	Metagenome / Metatranscriptome	845	Y
F003326	Metagenome / Metatranscriptome	494	Y
F003770	Metagenome	469	Y
F004819	Metagenome / Metatranscriptome	422	Y
F007531	Metagenome / Metatranscriptome	349	Y
F024645	Metagenome / Metatranscriptome	205	Y
F040642	Metagenome / Metatranscriptome	161	Y
F051466	Metagenome / Metatranscriptome	144	N
F054087	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208763_100008711	F024645	AGGAG	MQKNRKEYFITELNMGIDGLESYTDYSGPFTLAKARKIMEKLMKNPGQWVNPYMMSIRGPRHTNGYGHNTEFYSHREDR
Ga0208763_100008717	F040642	AGGAG	MNRLNWIMKEIYKDGRKNFKWVLKGAGLVLAMILLIKVFIYFDIKDLFLPILGILIPIGMLYHWYSMSYDQEQTKIIDKLKGDK
Ga0208763_10000872	F051466	AGAAGG	MKMTKKKMGLGVAIIAALVILWSVFKPAPAEAADVDFTFGAERKVEAETNAMYLDSHVDLWAGIGATSGLNYDVDDNMNATFNSFELDFDKDIGERASVYVNNDFDVNLDHTETVIGFKLKF
Ga0208763_100008720	F007531	AGGAGG	MMKRIEKLITDFVEDTGLTERQEMVHGSLYVKLKDQKGFDHFHKVLRTFFKEEVDNEGGVNMYALGDEFAFDFVPEDREAPVFVEPYSEEKFSGKEMMDPTDLDLTDEQESELDVLMNLEAEAVRGK
Ga0208763_100008723	F000896	AGGAG	MTNKINLVINLSILALLIYLAVSVKQLQDKVFPDPNIMIPLMSYDNSKQELEYNIREFLNSILEQAIKEQENQ
Ga0208763_100008735	F004819	GAGG	MQFYPKDENPMLDERSARFHGRVMKEDLATLPYVLDTTNRDINVARATNYVTWDYDKDMWCEVDHLMMNFYIKAKTTDTREYLEDKINRDVVTLIKGPRYYEQAKVYCTIDMNYPEDESIYDIVKVPKKDRKKAGWSISGNEGDITYFVTLHIQECNPTDLIVYDDEGRGDYFDLSGKNLETKEKEMA
Ga0208763_10000874	F003770	AGCAG	MGTYTPLRIPVNTFMFKMFAIICAVTVMDCVTLYEDPPRTFNTKQECEAASSIKAEQTLEMLTDEGELTVEHFEVGCEKQ
Ga0208763_100008740	F003326	AGGAG	MATIEQKKKLIRTIKTPNRYFRLVFNRYGGEVAMGSITQDQFDYWEDNDGFEEYMSQVDYDSEEANKDIPKKAQFDQPFYEYGDICHSSGPEWADSQTLYIEEVNKDGQALEKEDGTGYVEDQQYDYGDLESLGVDVECSATHNQSTIEGPYVFGQYFNKGGWHTEVIKTGPDGIEFDKMKIRYEDADGFKVFDEVEYDGEHYHLEEDSTGKSSSFYVGEGLMTKEESK
Ga0208763_100008744	F054087	GGAGG	MPKFRLLVDVDSVVDEAEHLEEIFKDGFDCSEEEAEKIVEAKVKELMYGGPYYSIVEDEEDE