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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026136 Open in IMG/M |
| Scaffold ID | Ga0208763_1000001 Open in IMG/M |
| Source Dataset Name | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 147065 |
| Total Scaffold Genes | 189 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 133 (70.37%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 11 (100.00%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean: Eastern Tropical North Pacific | |||||||
| Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004630 | Metagenome / Metatranscriptome | 430 | Y |
| F006643 | Metagenome / Metatranscriptome | 368 | Y |
| F007946 | Metagenome / Metatranscriptome | 342 | Y |
| F008525 | Metagenome / Metatranscriptome | 332 | Y |
| F011529 | Metagenome / Metatranscriptome | 290 | Y |
| F019486 | Metagenome / Metatranscriptome | 229 | Y |
| F029246 | Metagenome / Metatranscriptome | 189 | Y |
| F040871 | Metagenome / Metatranscriptome | 161 | Y |
| F045369 | Metagenome / Metatranscriptome | 153 | N |
| F045374 | Metagenome / Metatranscriptome | 153 | Y |
| F076496 | Metagenome / Metatranscriptome | 118 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208763_1000001103 | F008525 | AGGAG | MLTFKESFNEVLEAKLKLGGGEKVVKQFKKLGKKKNIEAVITQQKAGNKNFNLYIDGLKLDTYKDQIAAEAAIKEFIKLMGA |
| Ga0208763_1000001104 | F007946 | GAG | MSTRDLIDNIKSGDAQASNNTFNSIMHDKLIDALDTHKQEVASKMYGASDDAPAVEEPAAETEVEVTGEVEADADV |
| Ga0208763_100000111 | F011529 | GGA | MWVKESKRKTIDNLDGIRLRSARLWLDKDGFHPFLDQDDLTKPDLQKSMGCAYADLPKEAWDTMDRYDEALAKGSIYAT |
| Ga0208763_1000001118 | F006643 | GGA | MDSDVKLLEIENKLERMHAALQRQEKELDSWRERSVRVPNWIRNAGFALFITLIGQTMTAVWWASEITNTQMNIVDDVKVNTEFRLSSTERYNEIMIKLTKMEVMMTNHFEQDTRN |
| Ga0208763_1000001120 | F029246 | AGGAG | MGSNWGLIAFGLIALFATSFIKIAAIAAIGWGAWKAYQDWGAM |
| Ga0208763_100000113 | F076496 | AGGAG | MGRSKELQDFIDANPDKFRVVSPEETAKTLKKQSGGYFKGQSVMGPSKKKGKSS |
| Ga0208763_100000120 | F045374 | GGAG | MICHECNSPDFDVTVKEELGYDNDPIDLGLEVTHCPFCGANLEWAQRGGYDASEYDNDEERLDL |
| Ga0208763_100000132 | F019486 | GGAG | MKLIDRLVQSYTRIDEARVKDNHRWNANDELATMNFIYKDFKKELGRDPGKPYMDDDELVVGDKTVLRMKDNTSVADMKKAVQSWIAKNVKPAAGEVKVGKFNAKLPTEMKGVLGNKAVKLDNPRVIIKTDVNSAKEIQAAVKGTGKFRMMKRKDHVAVYLDFADGDQLKAAMAKVKKIK |
| Ga0208763_10000015 | F004630 | GGAG | MEYNNTKLMSEHYKDDGSVAKIYQVVTGMDGEHSFFSITYKDPAGNRIMQEDFPYKALNYVEDAAENWCKGIKLLKG |
| Ga0208763_100000151 | F045369 | AGGAGG | VPLNLYTETFNQTDIDPKRLYARAKAESEKITWNPNNRTREQILMDCMMGQCAELYLIDKCGYTDNPNGFMDVFDLEGREIEVKVTRGEHNIKFMLGDLLVRKIEWGYHVADIVYFYLYDPKSGDYTFCREYNFNGTDYVLSN |
| Ga0208763_10000018 | F040871 | AGGA | MSTTQLFEALEDNVKRMGMMGQWYQRYDISEAAEKSKKIIKELKKELDPPCGMSRK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |