NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208815_1059879

Scaffold Ga0208815_1059879


Overview

Basic Information
Taxon OID3300026134 Open in IMG/M
Scaffold IDGa0208815_1059879 Open in IMG/M
Source Dataset NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3438_5245 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)517
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)-9.4986Long. (o)-25.9999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022108Metagenome216Y
F056145Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0208815_10598791F022108N/AMSMLRTHMIRAETSSPMSKDQYRHEASAFGELRYTIKYLSETKDFKGDEMKGHTLRNYGLEVIDRLKEITKKIEDAIEEGKEMKSDGYVYENFELKQKEVK
Ga0208815_10598792F056145AGGAGGMKVTIDISDDDWRLMKKNRYGHGNVITRSYMLDIVHDIIDQIHEESR

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