NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209955_1100333

Scaffold Ga0209955_1100333


Overview

Basic Information
Taxon OID3300026123 Open in IMG/M
Scaffold IDGa0209955_1100333 Open in IMG/M
Source Dataset NameWater microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_H2O_MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)527
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location NameSouth San Francisco, USA
CoordinatesLat. (o)37.4962Long. (o)-122.1329Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043961Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0209955_11003331F043961N/AVKDTKVRYKFHEHRYTFKGNFSYAADCIRHSLDMMGHEEDNESPELHVYNHTCRDLEPDMPENSIIFKPTAPTSKHFQICREGYANSSEITFEEPVEYEYRKYDNIEWNEINDLIERRANKWDDSIMLKWPDAKNVKKDHILIIGQMPEDETVMGFGFGDHWKKMCMIIDKLEDR

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