Scaffold Ga0207683_10000237

Overview

Basic Information

• Taxon OID: 3300026121
• Scaffold ID: Ga0207683_10000237
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48967
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (46.30%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036724	Metagenome / Metatranscriptome	169	N
F067971	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207683_1000023723	F036724	GGAGG	MWSRSYRRHVIMAFPSFDTATNSWAPQADISWPIGPERQSEFVRFPLRVMTESEAVACALRRGQSWIDNRLRARSAEKTANLVVDRINSLPSSFRRTNLKPPAKPTATIRNDSTEPFTFAQFKSAVVRPGTKIAESALRKSYSGLMQLQKNKNWSTADIRATLMRVQDFLLSQSTRRAQRNRLPMTERDWRKIA
Ga0207683_1000023751	F067971	AGGAGG	MNMNQIVYDLAYWFDFVLLAVSHHPLISVATVLVAFLFYQALGVMKVIGTIISFALAVATAILLQMLM