NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207966_1043488

Scaffold Ga0207966_1043488


Overview

Basic Information
Taxon OID3300026119 Open in IMG/M
Scaffold IDGa0207966_1043488 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_NADW_ad_2500m_LV_B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1208
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054107Metagenome / Metatranscriptome140N
F081448Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0207966_10434882F054107GAGGMKKEKLEPKEKANAAAGNFVNAVQTGLTEMNKRLQDMEQKVQEKDKLLNDMAMALKSQQDVLVNAPPEVQGSEAERNQPMTKGDFFQIIKDGIQLLRQQTQGVDPRIERAIDMQDKLVDAMWEKMARALISDKDTSPGVN
Ga0207966_10434884F081448GAGGLKALDVLTDIIKNKNLAKEYALQESKDLRVLSPKKDTALACLLSGIESVETIPEWVKTSWFNWIFYAMRMISDKEVDALAESMSKGLEEYKMAYFSQEFIESLPKEKRPAAEALLHPHLLKLKGSHTTMEETLKEWRI
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