Scaffold Ga0207966_1030779

Overview

Basic Information

• Taxon OID: 3300026119
• Scaffold ID: Ga0207966_1030779
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_NADW_ad_2500m_LV_B (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1531
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001048	Metagenome / Metatranscriptome	793	Y
F002874	Metagenome / Metatranscriptome	524	Y
F042009	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207966_10307794	F042009	GGA	MICSNCGERISKGIDIGHHWNLSEDLAFACSEKCAEEAPKNWLSENPTTLYKNKFNKKD
Ga0207966_10307795	F001048	AGGA	LKIKSTKQFWWRLNHLKRNGGEITVTDRTPEMDVKDFNRIELLVNKRVRWEIGSEGMAIWNACGVKDIPTLAKAYGIK
Ga0207966_10307796	F002874	N/A	MEEKIDLSLNRSLGELESSYWEFLEATEGEDSSEWSKSVQEDFSALEGYLMKMEVL