Scaffold Ga0207966_1030213

Overview

Basic Information

• Taxon OID: 3300026119
• Scaffold ID: Ga0207966_1030213
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_NADW_ad_2500m_LV_B (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1551
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033842	Metagenome / Metatranscriptome	176	N
F064796	Metagenome	128	N
F068933	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207966_10302131	F064796	GAG	MVQTNESIYGKHRAFTSSQQNLVLPGAKSKYLEAISVTINGLQNGGSVPSIANALGLVNPLEIDVGGIPQIRVRLSDMYAIDMLWLQHNPLTKISAGDDQEWIVNQIVYPCWFPPSRAEATLSATYAAVTAADNTEISITSEYLDGIPRNEALYYSEFSRNTDGVDSSSFGNWTQTTNLVGNMTGML
Ga0207966_10302132	F033842	AGGA	MNILKDLTSPTKLIDKAKLGMKGAAGYAAATVALEAGTQILERFVLDPHLPQVANIMNTVITNNAPGLGTVDVRDAIVLLPAETQAYAMLSKSNKQTHFINALASYVTKIVLRRTGLNPKEIADKTEKLITPRMMLPSVM
Ga0207966_10302133	F068933	AGGAG	MSKLDLLKQLHRELLMPKALPGMKGTIGRPSDVIPVHAAGQLKGYWKNVKHKPATGFQVSKKNKFKD