Scaffold Ga0207966_1014691

Overview

Basic Information

• Taxon OID: 3300026119
• Scaffold ID: Ga0207966_1014691
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_NADW_ad_2500m_LV_B (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2554
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001493	Metagenome	683	Y
F006423	Metagenome	373	Y
F078839	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207966_10146912	F078839	GGA	MTEEKLISNLVLISFTCLWFIVLFMFGLLVYQSVTHQNQIDELIKSNAAVTALWMEDK
Ga0207966_10146913	F001493	GGA	MKSFKGYLQEKFQDWKSGSAPAWTESLSTMLFDLPRAGLKDLKIPLSSSIMNRVWPKSVRSKAFHVTDLDGVFKLTKMGKTKSISAFYNIEDIMISSGIKTNGGYVVELEGDVLAASPDDISSQPDKSGRRWITFSSLMNSSTDADPGLGGKAHLRGIETDLQDVLVNILKKNGEDVDESSRANIIGLQWSGLGMKTGGKEKSLIIKDYIDGMEKIMKKHSKSLRSVLTDYTKKRTLDPDPDSGDVAMWDELVINNFTIQKVHVGQEFGPDFSDPEVVDRFSKHFEGLGVSYELYDDVGDMVDYINKVVRRGT
Ga0207966_10146914	F006423	AGG	MKSFKQHLDEKTEYYLDPSKDNTEKYVANDGDYWYVGRVGMKGGSSFLKFVAAHGKDSYFESGKLKKVTPKEIEKDATGGQSMLSTVDFKKLYKR