NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207675_102123514

Scaffold Ga0207675_102123514


Overview

Basic Information
Taxon OID3300026118 Open in IMG/M
Scaffold IDGa0207675_102123514 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)578
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035648Metagenome171Y
F067977Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0207675_1021235141F067977N/AARGAPANARATLRCSGSFHDSTRVRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLQGRNPFHE
Ga0207675_1021235142F035648AGGAMSEHDTFDAVAISRADREFLASLSDHPLMRNPLYSVPPPPRPDYDGCTTVDERTGAQQACFPAALDWMLVNYAYYTDAFMGKGGIISLVDGKTGTIASLRGFMQPYTIVEEGPRGGLKKT

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