Scaffold Ga0207674_10026611

Overview

Basic Information

• Taxon OID: 3300026116
• Scaffold ID: Ga0207674_10026611
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6137
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030490	Metagenome / Metatranscriptome	185	N
F096512	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207674_100266111	F096512	N/A	VTWPDFVRGLEGFRDGFPRAAQAPEPRPESAAEIVGVLNRWACRLSTERAPGALEAWLANNTMAKFAPLAISDADLPTDELGALHDGLIAHMQSTSVSNMGPAAASKALYLLQPRLFVMWDKEIRRSAPEGYGSYLLQMHALAVRLTAEAPTDDVGAYLQELLGYENRKTLAKYLDEYNWFEAVGREQLTARAKV
Ga0207674_100266115	F030490	N/A	VGLFRRRTGLEDALRAHLERLGVSSFWLRSALDAIHYCEQGDIFQPVFSVAGPAPARSVVALMKLEPFVDGEIDWSISASESPFWVGAVGDPHDEAFDATASRFLELYWSDRNPSVRTDLQAALRDMDAPRSLLPLASAGYVWRAAESANRTTNLDPRAALEKEVAAVVASFPRNQSADRVLGWAATECVNRDLLFGSASPGGWASGGEFLRRAFRFAERRVVPEDLAFPLEDRWYAFSFGVALYDVDAVLATRPSTRAHDEDRQSPQTVS