NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207674_10026611

Scaffold Ga0207674_10026611


Overview

Basic Information
Taxon OID3300026116 Open in IMG/M
Scaffold IDGa0207674_10026611 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6137
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030490Metagenome / Metatranscriptome185N
F096512Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0207674_100266111F096512N/AVTWPDFVRGLEGFRDGFPRAAQAPEPRPESAAEIVGVLNRWACRLSTERAPGALEAWLANNTMAKFAPLAISDADLPTDELGALHDGLIAHMQSTSVSNMGPAAASKALYLLQPRLFVMWDKEIRRSAPEGYGSYLLQMHALAVRLTAEAPTDDVGAYLQELLGYENRKTLAKYLDEYNWFEAVGREQLTARAKV
Ga0207674_100266115F030490N/AVGLFRRRTGLEDALRAHLERLGVSSFWLRSALDAIHYCEQGDIFQPVFSVAGPAPARSVVALMKLEPFVDGEIDWSISASESPFWVGAVGDPHDEAFDATASRFLELYWSDRNPSVRTDLQAALRDMDAPRSLLPLASAGYVWRAAESANRTTNLDPRAALEKEVAAVVASFPRNQSADRVLGWAATECVNRDLLFGSASPGGWASGGEFLRRAFRFAERRVVPEDLAFPLEDRWYAFSFGVALYDVDAVLATRPSTRAHDEDRQSPQTVS

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