Scaffold Ga0207674_10010671

Overview

Basic Information

• Taxon OID: 3300026116
• Scaffold ID: Ga0207674_10010671
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10386
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018956	Metagenome / Metatranscriptome	232	Y
F023111	Metagenome / Metatranscriptome	211	Y
F023245	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207674_1001067110	F018956	AGGAG	MTECRRCAEEVDRAFRYCPWCGGPLRMKVTELFGGADGKALRVSRYFGDEESQVRVSVWSEALGRHLRADAAVSLTEDEAHRLARFLAEVAVRDEAQTL
Ga0207674_1001067112	F023111	AGGAGG	VGFLNSKRRLFIAFAALALLALPAAVFAAANHNFSGDAERQAAKWRTAGGTTSGTGWHDVPGLGMTKCTVREVSETATLTVSGGPVRFRAVVDGVPEAPMKPGIVRFVPSGKETVTYTFVANTAPFEADDDHRFDLQWQSPTGAPVTLHAGVVNLVFQRGTQSCS
Ga0207674_100106718	F023245	GGAG	VFRRANERLLAAVSNRIDEARPIPFLCECLDSECRSTVQLSIEQFRELRESDNRYAIVSGHPILDGERVLEVEGDVTIVKKP