NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208560_1009388

Scaffold Ga0208560_1009388


Overview

Basic Information
Taxon OID3300026115 Open in IMG/M
Scaffold IDGa0208560_1009388 Open in IMG/M
Source Dataset NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)837
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)9.7046Long. (o)-55.3027Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003936Metagenome / Metatranscriptome461Y
F015221Metagenome / Metatranscriptome256Y
F024328Metagenome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0208560_10093882F015221GAGGMFGKNKNAILYTYLIVKVRKYKDQEPYFSLYSTPAIADQTKARDTVEKLNSLAELENINGWQEEYYSVSMTL
Ga0208560_10093883F003936N/AMIETIEIFWSSKIELRVLLLAVFIVSGFWYYQDYKRKQKEKHQERLNQIK
Ga0208560_10093884F024328GAGGMTLTQMEKEIIKAIRMESRIPLISDVGYKNLIKFVKKLFKEYKNGS

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