Scaffold Ga0208560_1003784

Overview

Basic Information

• Taxon OID: 3300026115
• Scaffold ID: Ga0208560_1003784
• Source Dataset Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1232
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): 9.7046
  • Long. (^o): -55.3027

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F013820	Metagenome / Metatranscriptome	268	Y
F022754	Metagenome / Metatranscriptome	213	Y
F048916	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208560_10037842	F013820	AGGAG	MIKTVIDFVDKMMPGHKTYAIMIIGMAMMICQMMGYHHFDQEAWGVLGIGGAATWKMGQDRKKK
Ga0208560_10037843	F022754	GAG	MLVIPSPYKMVNWTVNQVPTQIQLIHKSGLEVSYNASPVSCSFRPRNNREMVFKSSETTCYAVYDLSSPTFIRHPDHWHPVEPQKSLKMNVGD
Ga0208560_10037844	F002078	AGGAG	MDIASMFEGQGWFEIAGQVVLVFTAVTGALPDKFVQKIPILSTVWPIFNWLAGNVFNNINHPKGMAASADVEKEIDEAKAKVRARSGMPDVLDGM
Ga0208560_10037845	F048916	GAG	MKQKLKLGLVAVCLTFLTGCSTAILSELAAPVANFGLGLYNADTYYSKECAWYEEVKMSQDTKQWLLQNNPPPIVSEDLAQVAKNNDIYKQVCDPKPEEE